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Judge extends temporary block to huge cuts in National Institutes of Health research funding

BOSTON (AP) 鈥 A federal judge on Friday again blocked the Trump administration鈥檚 drastic cuts in medical research funding that many scientists say will endanger patients and delay new lifesaving studies.
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Medical researchers from universities and the National Institutes of Health rally near the Health and Human Services headquarters to protest federal budget cuts Wednesday, Feb. 19, 2025, in Washington. (AP Photo/John McDonnell)

BOSTON (AP) 鈥 A federal judge on Friday again blocked the drastic cuts in that many scientists say will endanger patients and delay new lifesaving studies.

The new policy would strip research groups of hundreds of millions of dollars to cover so-called indirect expenses of studying Alzheimer鈥檚, cancer, heart disease and a host of other illnesses 鈥 anything from clinical trials of new treatments to basic lab research that is the foundation for discoveries.

Separate lawsuits filed by a group of 22 states plus organizations representing universities, hospitals and research institutions nationwide sued to stop the cuts, saying they would cause 鈥渋rreparable harm.鈥

U.S. District Judge Angel Kelley had issued a temporary restraining order earlier this month blocking the cuts. During a court hearing in Boston Friday, Kelley, who was appointed by Democratic President Joe Biden, extended that temporary block until she rules on an injunction, a more permanent decision.

鈥淲hatever she decides, it鈥檚 not going to be the end of the story. It鈥檚 going to be appealed, probably all the way up to the Supreme Court because it鈥檚 of enormous consequence to the United States and to the rule of law,鈥 said Lawrence Gostin, a public health law expert at Georgetown University.

The states and research groups say the cuts are illegal and 鈥渋n open defiance鈥 of bipartisan congressional action during President Donald Trump鈥檚 first term to prohibit it.

It 鈥渧iolates bipartisan appropriations law. I should know, I helped author that provision,鈥 Sen. Patty Murray, a Democrat from Washington state, said during Senate budget debate early Friday.

In court, Trump administration attorney Brian Lea said the issue is 鈥渂road discretion power of the executive branch鈥 in how to allocate funds and that the government has 鈥渇ully complied鈥 with regulations. The administration also contends research groups haven't demonstrated irreparable injury.

Not so, argued John Bueker, an attorney representing the research groups. The cuts threaten to derail scores of clinical trials of new treatments, with universities saying they鈥檒l have to 鈥渟top or not enroll patients.鈥

鈥淟et鈥檚 think about that. A clinical trial is a last hope for a lot of people,鈥 Bueker said.

The NIH, the main funder of biomedical research, awarded about $35 billion in grants to research groups last year. The total is divided into 鈥渄irect鈥 costs 鈥 covering researchers鈥 salaries and laboratory supplies 鈥 and 鈥渋ndirect鈥 costs, the administrative and facility costs needed to support that work.

The Trump administration had dismissed those expenses as 鈥渙verhead,鈥 but universities and hospitals argue they鈥檙e far more critical. They can include such things as electricity to operate sophisticated machinery, hazardous waste disposal, staff who ensure researchers follow safety rules and janitorial workers.

Different projects require different resources. Labs that handle dangerous viruses, for example, require more expensive safety precautions than a simpler experiment. Currently each grant鈥檚 indirect cost rate is negotiated with NIH. For example, a grant with a 50% rate means for every dollar in direct grant funding, 50 cents would be added for indirect expenses.

If the new policy stands, indirect costs would be capped at a rate of 15% instead. NIH calculated that would save the agency $4 billion a year.

That lower rate would be "similar to forcing a company to sell a product for $10 that costs $15 to produce,鈥 said Devon Cimini, a grants administrator at Florida State University. If the cap goes into effect, 鈥渜uite bluntly, there wouldn't be much research anymore.鈥

Research groups offered the federal court a long list of examples of immediate harm, in blue states and red states. Among the examples, Johns Hopkins University and the University of Wisconsin, Madison, worry about seriously ill patients with no other options if they have to scale back clinical trials.

Bueker said the University of Washington might have to 鈥渆uthanize valuable research animals鈥 at its primate center.

Then there鈥檚 the impact on jobs, like 45 layoffs the University of Florida is considering and the potential loss of about 500 new jobs if construction of a new research facility in Detroit is stopped.

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Neergaard reported from Washington.

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The Associated Press Health and Science Department receives support from the Howard Hughes Medical Institute鈥檚 Science and Educational Media Group and the Robert Wood Johnson Foundation. The AP is solely responsible for all content.

Lauran Neergaard And Michael Casey, The Associated Press

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